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Publications using tilibit nanosystems DNA origami structures

Joseph, Shapiro, Gillis, Barkey, Abu-Horowitz, Bachelet (2023) Biodistribution and function of coupled polymer-DNA origami nanostructures https://doi.org/10.1038/s41598-023-46351-1

Kler, Zalk, Upcher, Kopatz (2022) Packaging of DNA origami in viral capsids: towards synthetic viruses https://doi.org/10.1039/d2nr01316a

Schmid, Stömmer, Dietz, Dekker (2021) Nanopore electro-osmotic trap for the label-free study of single proteins and their conformations http://doi.org/10.1038/s41565-021-00958-5

Böning, Wieser, Sandoghdar (2020) Polarization-Encoded Colocalization Microscopy at Cryogenic Temperatures http://doi.org/10.1021/acsphotonics.0c01201

Thomas, Diagne, Baillin, Chevolleau, Charvolin, Tiron (2020) DNA Origami for Silicon Patterning http://doi.org/10.1021/acsami.0c10211

Kopatz, Zalk, Zlotkin-Rivkin, Frank, Kler (2019) Packaging of DNA origami in viral capsids. http://doi.org/10.1039/C8NR10113B

Diagne, Brun, Gasparutto, Baillin, Tiron (2016) DNA Origami Mask for Sub-Ten-Nanometer Lithography http://doi.org/10.1021/acsnano.6b00413

Publications using tilibit nanosystems scaffold DNA

Shetty, Rothemund, Gopinath, Hariadi, Brady (2021) Bench-Top Fabrication of Single-Molecule Nanoarrays by DNA Origami Placement http://doi.org/10.1021/acsnano.1c01150

Gopinath, Thachuk, Mitskovets, Atwater, Kirkpatrick, Rothemund (2021) Absolute and arbitrary orientation of single molecule shapes http://doi.org/10.1126/science.abd6179

P Williamson, H Ijäs, B Shen, DK Corrigan, V Linko (2021) Probing the conformational states of a pH-sensitive DNA origami zipper via label-free electrochemical methods, Langmuir

AJ Lee, M Endo, JK Hobbs, AG Davies, et al. (2021) Micro-homology intermediates: RecA's transient sampling revealed at the single molecule level, Nucleic Acids Research

H Ijäs, B Shen, A Heuer-Jungemann, et al. (2021) Unraveling the interaction between doxorubicin and DNA origami nanostructures for customizable chemotherapeutic drug release, Nucleic Acids Research

C Lanphere, D Offenbartl-Stiegert, A Dorey, G Pugh, et al. (2021) Design, assembly, and characterization of membrane-spanning DNA nanopores, Nature protocols

L Sala, A Zerolová, A Rodriguez, D Reimitz, et al. (2021) Folding DNA into origami nanostructures enhances resistance to ionizing radiation, Nanoscale

L Xin, X Duan, N Liu (2021) Dimerization and oligomerization of DNA-assembled building blocks for controlled multi-motion in high-order architectures, Nature communications

E Silvester, B Vollmer, V Pražák, D Vasishtan, et al. (2021) DNA origami signposts for identifying proteins on cell membranes by electron cryotomography, Cell

E Benson, R Carrascosa Marzo, J Bath, AJ Turberfield (2021) Strategies for Constructing and Operating DNA Origami Linear Actuators, Small

RML Berger, JM Weck, SM Kempe, O Hill, T Liedl, et al. (2021) Nanoscale FasL Organization on DNA Origami to Decipher Apoptosis Signal Activation in Cells, Small

K Jahnke, N Ritzmann, J Fichtler, A Nitschke, et al. (2021) Proton gradients from light-harvesting E. coli control DNA assemblies for synthetic cells, Nature communications

LS Fischer, C Klingner, T Schlichthaerle, et al. (2021) Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion, Nature communications

K Jahnke, N Ritzmann, J Fichtler, A Nitschke, Y Dreher, et al. (2021) Proton gradients from light-harvesting E. coli control DNA assemblies for synthetic cells, Nature communications

Filius, Cui, Ananth, Docter, Hegge, van der Oost, Joo (2020) High-Speed Super-Resolution Imaging Using Protein-Assisted DNA-PAINT http://doi.org/10.1021/acs.nanolett.9b04277

MK Nguyen, VH Nguyen, AK Natarajan, et al. (2020) Ultrathin silica coating of DNA origami nanostructures, Chemistry of Materials

S Liu, S Murata, I Kawamata (2020) DNA Ring Motif with Flexible Joints, Micromachines

TY Yang, L Yu, Y Akiyama, T Takarada, M Maeda (2020) DNA-Programmed Bimodal 2D Assembly of Differently Sized Nanoparticles via Folding of Precursory Circular Chains, Langmuir

K Göpfrich, MJ Urban, C Frey, I Platzman, JP Spatz, et al. (2020) Dynamic actuation of DNA-assembled plasmonic nanostructures in microfluidic cell-sized compartments, Nano Letters

T Watanabe, Y Sato, H Otaka, I Kawamata, S Murata, et al. (2020) DNA origami “quick” refolding inside of a micron-sized compartment, Molecules

J Ye, R Weichelt, U Kemper, V Gupta, TAF König, et al. (2020) Casting of Gold Nanoparticles with High Aspect Ratios inside DNA Molds, Small

B Zhang, K Martens, L Kneer, T Funck, L Nguyen, et al. (2020) DNA Origami Nano-Sheets and Nano-Rods Alter the Orientational Order in a Lyotropic Chromonic Liquid Crystal, Nanomaterials

P Piskunen, S Nummelin, B Shen, MA Kostiainen, et al. (2020) Increasing complexity in wireframe DNA nanostructures, Molecules

W Fang, M Xie, X Hou, X Liu, X Zuo, et al. (2020) DNA origami radiometers for measuring ultraviolet exposure, Journal of the American Chemical Society

Woods, Doty, Myhrvold, Hui, Zhou, Yin, Winfree (2019) Diverse and robust molecular algorithms using reprogrammable DNA self-assembly, Nature, https://doi.org/10.1038/s41586-019-1014-9

Bartnik, Barth, Pilo-Pais, Crevenna, Liedl, Lamb (2019) A DNA origami platform for single-pair Förster Resonance Energy Transfer investigation of DNA-DNA interactions and ligation. http://doi.org/10.1021/jacs.9b09093

Liu, Weiss, Kuzyk, Duan, Both, Urban, Zhan (2019) DNA-assembled nanoarchitectures with multiple components in regulated and coordinated motion. http://doi.org/10.1126/sciadv.aax6023

Ijäs, , Kostiainen, Linko, Hakaste (2019) Reconfigurable DNA Origami Nanocapsule for pH-Controlled Encapsulation and Display of Cargo http://doi.org/10.1021/acsnano.9b01857

Rödiger, Tinnefeld, Bald, Choi (2019) A new reporter design based on DNA origami nanostructures for quantification of short oligonucleotides using microbeads. http://doi.org/10.25932/publishup-42827

Vogel, Ebel, Schürmann, Heck, Meiling, et al.  (2019) Vacuum-UV and low-energy electron induced DNA strand breaks - Influence of the DNA sequence and substrate http://doi.org/10.1002/cphc.201801152

Choi, Tinnefeld, Bald, Rödiger, Schmidt (2019) A new reporter design based on DNA origami nanostructures for quantification of short oligonucleotides using microbeads http://doi.org/10.1038/s41598-019-41136-x

Julin, Korpi, Nonappa, Shen, Liljeström, Ikkala, Keller, Linko, Kostiainen (2019) DNA origami directed 3D nanoparticle superlattice via electrostatic assembly. http://doi.org/10.1039/C8NR09844A

X Jing, F Zhang, M Pan, X Dai, J Li, L Wang, X Liu, et al. (2019) Solidifying framework nucleic acids with silica, Nature protocols

I Kopatz, R Zalk, Y Levi-Kalisman, E Zlotkin-Rivkin, et al. (2019) Packaging of DNA origami in viral capsids, Nanoscale

X Xu, S Fang, Y Zhuang, S Wu, Q Pan, L Li, X Wang, et al. (2019) Cationic albumin encapsulated DNA origami for enhanced cellular transfection and stability, Materials

L Xin, C Zhou, X Duan, N Liu (2019) A rotary plasmonic nanoclock, Nature communications

P Zhan, MJ Urban, S Both, X Duan, et al. (2019) DNA-assembled nanoarchitectures with multiple components in regulated and coordinated motion, Science Advances

S Vogel, K Ebel, C Heck, RM Schürmann, et al. (2019) Vacuum-UV induced DNA strand breaks–influence of the radiosensitizers 5-bromouracil and 8-bromoadenine, Physical Chemistry Chemical Physics

T Mino, N Iwai, M Endo, K Inoue, K Akaki, et al. (2019) Translation-dependent unwinding of stem–loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs, Nucleic Acids Research

Y Huang, MK Nguyen, A Kuzyk (2019) Assembly of gold nanorods into chiral plasmonic metamolecules using DNA origami templates, JoVE (Journal of Visualized Experiments)

K Fujita, M Ohmachi, K Ikezaki, T Yanagida, et al. (2019) Direct visualization of human myosin II force generation using DNA origami-based thick filaments, Communications Biology

B Sheheade, M Liber, M Popov, Y Berger, DC Khara, et al. (2019) Self‐Assembly of DNA Origami Heterodimers in High Yields and Analysis of the Involved Mechanisms, Small

F Scheffler, M Brueckner, J Ye, R Seidel, et al. (2019) A Hybrid Carrier System Based on Origami Nanostrucutures and Layer‐by‐Layer Microparticles, Advanced Functional Materials

ME Kizer, RJ Linhardt, AR Chandrasekaran, X Wang (2019) A molecular hero suit for in vitro and in vivo DNA nanostructures, Small

J Valero, M Centola, Y Ma, M Škugor, Z Yu, et al. (2019) Design, assembly, characterization, and operation of double-stranded interlocked DNA nanostructures, Nature protocols

Fritzsche, Csáki, Dathe, Slesiona, Thamm (2018) AFM-Based Probing of the Flexibility and Surface Attachment of Immobilized DNA Origami http://doi.org/10.1021/acs.langmuir.8b02362

Choi, Kotthoff, Olejko, Resch-Genger, Bald (2018) DNA origami-based Förster resonance energy-transfer nanoarrays and their application as ratiometric sensors http://doi.org/10.1021/acsami.8b03585

Kostiainen, Linko, Mikkilä (2018) Packaging DNA origami into viral protein cages http://doi.org/10.1007/978-1-4939-7808-3_18

B Shen, V Linko, JJ Toppari (2018) DNA-assisted molecular lithography, DNA Nanotechnology

Y Choi, L Kotthoff, L Olejko, et al. (2018) DNA origami-based forster resonance energy-transfer nanoarrays and their application as ratiometric sensors, ACS Applied Materials & Interfaces

B Shen, V Linko, K Tapio, S Pikker, et al. (2018) Plasmonic nanostructures through DNA-assisted lithography, Science Advances

R Chikkaraddy, VA Turek, N Kongsuwan, F Benz, et al. (2018) Mapping nanoscale hotspots with single-molecule emitters assembled into plasmonic nanocavities using DNA origami, Nano Letters

F Kollmann, S Ramakrishnan, B Shen, et al. (2018) Superstructure-dependent loading of DNA origami nanostructures with a groove-binding drug, ACS Omega

VA Turek, R Chikkaraddy, S Cormier, et al. (2018) Thermo‐Responsive Actuation of a DNA Origami Flexor, Advanced Functional Materials

T Bayrak, S Helmi, J Ye, D Kauert, J Kelling, et al. (2018) DNA-mold templated assembly of conductive gold nanowires, Nano Letters

MJ Urban, S Both, C Zhou, A Kuzyk, K Lindfors, et al. (2018) Gold nanocrystal-mediated sliding of doublet DNA origami filaments, Nature communications

D Wang, J Song, P Wang, V Pan, Y Zhang, D Cui, et al. (2018) Design and operation of reconfigurable two-dimensional DNA molecular arrays, Nature protocols

Zanacchi, Manzo, Alvarez, Derr, Parajo, Lakadamyali (2017) DNA Origami offers a versatile method for quantifying protein copy‐number in superresolution http://doi.org/10.1038/nmeth.4342

HJ Su, CE Castro, AE Marras, et al. (2017) The Kinematic Principle for Designing Deoxyribose Nucleic Acid Origami Mechanisms: Challenges and Opportunities, Journal of Mechanical Design

FC Zanacchi, C Manzo, AS Alvarez, ND Derr, et al. (2017) A DNA origami platform for quantifying protein copy number in super-resolution, Nature Methods

A Kuzyk, MJ Urban, A Idili, F Ricci, et al. (2017) Selective control of reconfigurable chiral plasmonic metamolecules, Science Advances

V Korpelainen, V Linko, J Seppä, et al. (2017) DNA origami structures as calibration standards for nanometrology, Measurement Science and Technology

T Uchida, K Abe, Y Endo, S Ichiseki, S Akita, S Liu, et al. (2017) Revolving Vernier Mechanism Controls Size of Linear Homomultimer, Small

K Toropova, M Mladenov, AJ Roberts (2017) Intraflagellar transport dynein is autoinhibited by trapping of its mechanical and track-binding elements, Nature structural & molecular biology

L Olejko, I Bald (2017) FRET efficiency and antenna effect in multi-color DNA origami-based light harvesting systems, Rsc Advances

Derr, Driller-Colangelo, Chau, Morgan (2016) Cargo rigidity affects the sensitivity of dynein ensembles to individual motor pausing http://doi.org/10.1002/cm.21339

Keller, Ramakrishnan, Stewart, Grundmeier (2016) Regular Nanoscale Protein Patterns via Directed Adsorption through Self-Assembled DNA Origami Masks http://doi.org/10.1021/acsami.6b10535

Kostiainen, Kiviaho, Linko, Ora, Tiainen, Järvihaavisto, Mikkilä, Tenhu, Nonappa (2016) Cationic polymers for DNA origami coating – examining their binding efficiency and tuning the enzymatic reaction rates http://doi.org/10.1039/C5NR08355A

Keller, Schlierf (2016) Structural stability of DNA origami nanostructures in the presence of chaotropic agents http://doi.org/10.1039/c6nr00835f

Kuzyk, Liu, Yang, Endo, Duan, Stoll, Govorov, Sugiyama (2016) A light-driven three-dimensional plasmonic nanosystem that translates molecular motion into reversible chiroptical function http://doi.org/10.1038/ncomms10591

JK Kiviaho, V Linko, A Ora, T Tiainen, E Järvihaavisto, et al. (2016) Cationic polymers for DNA origami coating–examining their binding efficiency and tuning the enzymatic reaction rates, Nanoscale

V Linko, B Shen, K Tapio, JJ Toppari, MA Kostiainen, et al. (2015) One-step large-scale deposition of salt-free DNA origami nanostructures, Scientific reports

A Shapiro, A Hozeh, O Girshevitz, et al. (2015) Cooperativity-based modeling of heterotypic DNA nanostructure assembly, Nucleic Acids Research

Linko, Tapio, Toppari, Kostiainen, Tuukkanen (2015) One-Step Large-Scale Deposition of Purified and Salt-Free DNA Origami Nanostructures http://doi.org/10.1038/srep15634